<> <> <> ###################### karyotype = data/8/karyotype.microbe.txt <> chromosomes_units = 1000 chromosomes_display_default = yes file = data/8/BAV1_rdh.color.txt r1 = conf(.,r0)+0.03r r0 = 0.95r ########################################### type = heatmap file = data/8/Dehalococcoidessp.BAV1.gene_table2.GC_heatmap.csv r1 = 0.94r r0 = 0.92r # Colors are defined by a combination of lists or CSV. Color lists # exist for all Brewer palletes (see etc/colors.brewer.lists.conf) as # well as for N-step hue (hue-sN, e.g. hue-s5 = # hue000,hue005,hue010,...) and N-color hue (hue-sN, e.g. hue-3 = # hue000,hue120,hue140). color =hue-s5 #color = hs1_a5,hs1_a4,hs1_a3,hs1_a2,hs1_a1,hs1 # If scale_log_base is used, the mapping is not linear, but a power law # # n = N * f**(1/scale_log_base) # # When scale_log_base > 1 the dynamic range for values close to min is expanded. # When scale_log_base < 1 the dynamic range for values close to max is expanded. scale_log_base = 5 # The type sets the format of the track. type = histogram file = data/8/Dehalococcoidessp.BAV1.gene_table2.hist.cub.csv # The track is confined within r0/r1 radius limits. When using the # relative "r" suffix, the values are relative to the position of the # ideogram. r1 = 0.91r r0 = 0.88r # Histograms can have both a fill and outline. The default outline is 1px thick black. fill_color = vdgrey # To turn off default outline, set the outline thickness to zero. If # you want to permanently disable this default, edit # etc/tracks/histogram.conf in the Circos distribution. #thickness = 0p # Do not join histogram bins that do not abut. extend_bin = no # Like for links, rules are used to dynamically alter formatting of # each data point (i.e. histogram bin). Here, I include the # block from a file, which contains the following # # # condition = on(hs1) # show = no # # # to avoid displaying any data on hs1. The rule is included from a # file because it is reused again in the track below. ## ##<> ## type = tile file = data/8/Dehalococcoidessp.BAV1.gene_table2.txt r1 = 0.66r r0 = 0.64r layers = 2 margin = 0.2u thickness = 12 padding = 1 layers_overflow = hide orientation = out stroke_thickness = 1 stroke_color = orange color = orange condition = var(size) < 5kb color = lgrey type = tile file = data/8/Dehalococcoidessp.11a.gene_tableBAV1.txt r1 = 0.70r r0 = 0.68r layers = 2 margin = 0.2u thickness = 12 padding = 1 layers_overflow = hide orientation = out stroke_thickness = 1 stroke_color = blue color = blue condition = var(size) < 5kb color = lgrey type = tile file = data/8/Dehalococcoidessp.195cds.gene_tableBAV1.txt r1 = 0.74r r0 = 0.72r layers = 2 margin = 0.2u thickness = 12 padding = 1 layers_overflow = hide orientation = out stroke_thickness = 1 stroke_color = orange color = orange condition = var(size) < 5kb color = lgrey type = tile file = data/8/Dehalococcoidessp.VScds.gene_tableBAV1.txt r1 = 0.78r r0 = 0.76r layers = 2 margin = 0.2u thickness = 12 padding = 1 layers_overflow = hide orientation = out stroke_thickness = 1 stroke_color = orange color = orange condition = var(size) < 5kb color = lgrey type = tile file = data/8/Dehalococcoidessp.CBDB1cds.gene_tableBAV1.txt r1 = 0.82r r0 = 0.80r layers = 2 margin = 0.2u thickness = 12 padding = 1 layers_overflow = hide orientation = out stroke_thickness = 1 stroke_color = orange color = orange condition = var(size) < 5kb color = lgrey type = tile file = data/8/Dehalococcoidessp.GTcds.gene_tableBAV1.txt r1 = 0.86r r0 = 0.84r layers = 2 margin = 0.2u thickness = 12 padding = 1 layers_overflow = hide orientation = out stroke_color = orange color = orange condition = var(size) < 5kb color = lgrey <>