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shenzy@shenzy-ubuntu:~/Desktop/zhanglei/pgenes/pseudopipe/bin$ ./pseudopipe.sh /home/shenzy/Desktop/zhanglei/pgenes/ppipe_output/prodigal/tcs4/ /home/shenzy/Desktop/zhanglei/pgenes/ppipe_input/prodigal/tcs4/dna/tcs4_genome.fasta.masked /home/shenzy/Desktop/zhanglei/pgenes/ppipe_input/prodigal/tcs4/d[……] […] The easiest way is to use the gffread program that comes with the Cufflinks software suite (Tuxedo) gffread my.gff3 -T -o my.gtf See gffread -h for more information ADD REPLY • link
[…] STAMP 
Using STAMP to identify SEED subsystems which are differentially abundant between CandidatusAccumulibacter phosphatis sequences obtained from a pair of enhanced biological phosphorus removal (EBPR) sludge metagenomes(data originally described in Parks and Beiko, 2010). [……] […] |
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