shenzy@shenzy-ubuntu:~/Desktop/zhanglei/pgenes/pseudopipe/bin$ ./pseudopipe.sh /home/shenzy/Desktop/zhanglei/pgenes/ppipe_output/prodigal/tcs4/ /home/shenzy/Desktop/zhanglei/pgenes/ppipe_input/prodigal/tcs4/dna/tcs4_genome.fasta.masked /home/shenzy/Desktop/zhanglei/pgenes/ppipe_input/prodigal/tcs4/dna/tcs4_genome.%s.fasta /home/shenzy/Desktop/zhanglei/pgenes/ppipe_input/prodigal/tcs4/pep/tcs4_prodigal.pep /home/shenzy/Desktop/zhanglei/pgenes/ppipe_input/prodigal/tcs4/mysql/contig.%s_exlocs 0 outDir=/home/shenzy/Desktop/zhanglei/pgenes/ppipe_output/prodigal/tcs4 rmkDir=/home/shenzy/Desktop/zhanglei/pgenes/ppipe_input/prodigal/tcs4/dna/tcs4_genome.fasta.masked Making directories Copying sequences inputDNA=/home/shenzy/Desktop/zhanglei/pgenes/ppipe_input/prodigal/tcs4/dna/tcs4_genome.fasta.masked Fomatting the DNAs formatDB start……. Preparing the blast jobs Finished blast Processing blast output Finished processing blast output Running Pseudopipe on both strands Working on M strand Finished Pseudopipe on strand M Working on P strand Finished Pseudopipe on strand […]
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The easiest way is to use the gffread program that comes with the Cufflinks software suite (Tuxedo) gffread my.gff3 -T -o my.gtf See gffread -h for more information ADD REPLY • link Fatal error: Call to undefined function is_post_publicly_viewable() in /www/wwwroot/szypanther/wp-includes/media.php on line 989 | |||||
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