ssh, scp and rsync

[Admin.DESKTOP-7JT504C] ➤ rsync -P –rsh=ssh /drives/d/Kraken_12.tar.gz cityu_jhli_1@172.16.22.11:/BIGDATA1/cityu_jhli_1/mhyleung/database/findfungi Warning: Permanently added ‘172.16.22.11’ (RSA) to the list of known hosts. rsync -P -avz -e “ssh -p5566 -i /drives/C/Users/Admin/Desktop/cityu_jhli[……]

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ClinVAP: A reporting strategy from variants to therapeutic options

https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btz924/5674039  

ClinVAP: A reporting strategy from variants to therapeutic options

 

Abstract

Motivation

Next-generation sequencing (NGS) has become routine in oncology and opens up new avenues of[……]

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dictionary to csv

#!/usr/bin/env python import os,re,sys,string,commands,getopt,subprocess,glob,csv import prettytable as pt from os import path #SL335752_kneaddata_paired_1_kneaddata_paired_1.fastq.gz_rep.mpa.txt_bracken.txt #SL311013_1_kneaddata_paired_1_kneaddata_paired_1.fastq.gz_rep_mpa.txt_bracken.txt def[……]

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Ubuntu中v2ray客户端配置实例

首先使用bash <(curl -L -s https://install.direct/go.sh)来快捷安装v2ray,如下:

root@vm:~# bash <(curl -L -s https://install.direct/go.sh) Installing V2Ray v4.18.0 on x86_64 Downloading V2Ray: https://github.com/v2ray/v2ray-core/releases/download/v4.18.0/v2ray-linux-64.zip % Total % Received % Xfer[......]

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Good software

multiqc   ranger    ployly https://github.com/MultiQC https://github.com/ranger/ranger https://zhuanlan.zhihu.com/p/34369349 […]

Histograms and Density Plots

Histograms and Density Plots

Histograms

You can create histograms with the function hist(x) where x is a numeric vector of values to be plotted. The option freq=FALSE plots probability densities instead of frequencies. The option breaks= controls the number of bins. # Simple Histogram hist(mtc[......]

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ARGs-OAP: 抗性基因在线分析工具(转)

ARGs_OAP_v2.0(步骤1):https://github.com/biofuture/Ublastx_stageone ARGs-OAP在线分析网站(步骤2): http://smile.hku.hk/SARGs
无处不在的抗性基因

图片.png

环境中抗生素抗性基因(ARGs)的来源: 随机突变或表达潜在抗性基因等方式使细菌体内基因组上存在的抗性基因原型、准抗性基因或潜在抗性基因被表达出来,从而使细菌获得的抗生素抗性。 抗生素在人和动物肠道内诱导产生耐药菌,这些编码ARGs的耐药菌经由粪便排出并进入环境中,是环境中ARGs的重要来源。[……]

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pronunciation

发音第一个 n 带鼻音 analysis    (noun single  ) analyses (noun)  (multiplex number of analysis) 动词 analyse  a’ n(ə)lʌɪz          发音a 不带鼻音 th 在尾巴 发 f thanks 中间ch发k的时候要弱化发音 […]

VOSEQ server start

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[shenzy@LFE0530 VoSeq-2.1.1]$ source /usr/bin/virtualenvwrapper.sh [shenzy@LFE0530 VoSeq-2.1.1]$ workon voseq_environment (voseq_environment) [shenzy@LFE0530 VoSeq-2.1.1]$ python voseq/manage.py runserver –settings=voseq.settings.local 143.89.29.80:8000  

setup environmental[……]

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Sci-Hub 最新可用网址

Pubmedy:显示影响因子+引用数、Sci-hub全文下载的浏览器扩展 很多人都知道一个下载文献的好地方 Sci-Hub,但是现在 Sci-Hub 的站长 Alexandra Elbakyan 女士面临着爱思唯尔的诉讼,让其面临数百万美元的赔偿。因此现在 Sci-Hub 在某些时候可能不可用了。不过 Alexandra Elbakyan 女士并未妥协,希望大家能多支持一下这位女士(貌似只能接受比特币捐款,我也不知道怎么弄,要是paypal或者payoneer就好了)。 相信很多人都知道下面这两个网址: Sci-Hub 官网:http://www.sci-hub.org/[……]

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