Good measure to download sequence from NCBI based on acc or gi number

cat file_with_ids.txt | while read p; do echo $p; esearch -db nucleotide -query $p | efetch -format fasta > $p.fasta; done;

 

 

cat ginumber.txt| while read p; do echo $p; efetch -db nucleotide -id $p -format gb > $p.gbk; done;

 

shenzy@SZYENVS:~/work/zhongshan/virus_database$ cat ginumber.txt| while read p; do echo $p; efetch -db nucleotide -id […]

July 16th, 2018 | Category: Linux相关 | Leave a comment

VOSEQ server start

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[shenzy@LFE0530 VoSeq-2.1.1]$ source /usr/bin/virtualenvwrapper.sh [shenzy@LFE0530 VoSeq-2.1.1]$ workon voseq_environment (voseq_environment) [shenzy@LFE0530 VoSeq-2.1.1]$

python voseq/manage.py runserver –settings=voseq.settings.local 143.89.29.80:8000

 

setup environmental variables, virtual environments Wai-Yin Kwan edited this page on Jul 5, 2015 · 12 revisions Pages 7 Home Common git commands Computer setup Github workflow Helpful links misc commands setup environmental variables, virtual environments […]

July 12th, 2018 | Category: 兴趣杂项, 服务器管理 | Leave a comment