Vipie: web pipeline for parallel characterization of viral populations from multiple NGS samples

Background

Next generation sequencing (NGS) technology allows laboratories to investigate virome composition in clinical and environmental samples in a culture-independent way. There is a need for bioinformatic tools capable of parallel processing of virome sequencing data by exactly identical meth[……]

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Utilities / Create consensus sequence from a BAM file

Utilities / Create consensus sequence from a BAM file

Description

Given an indexed BAM file and corresponding reference genome (in fasta format), this tool constructs a consensus sequence based on the alignment.

Parameters

None

Details

This tool uses SAMtools, bcftools and vcfutils.pl script t[……]

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