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BackgroundNext generation sequencing (NGS) technology allows laboratories to investigate virome composition in clinical and environmental samples in a culture-independent way. There is a need for bioinformatic tools capable of parallel processing of virome sequencing data by exactly identical meth[……] […] Utilities / Create consensus sequence from a BAM fileDescription Given an indexed BAM file and corresponding reference genome (in fasta format), this tool constructs a consensus sequence based on the alignment. Parameters None DetailsThis tool uses SAMtools, bcftools and vcfutils.pl script t[……] […] |
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