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Merging separate sequence and quality files to FASTQ

#!/usr/bin/perl -w use strict; use Bio::SeqIO; use Bio::Seq::Quality; use Getopt::Long; die "pass a fasta and a fasta-quality file\n" unless @ARGV; my ($seq_infile,$qual_infile) = (scalar @ARGV == 1) ?($ARGV[0], "$ARGV[0].qual") : @ARGV; ## Create input objects for both a se[......]

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Converting FASTQ to FASTA QUAL files

#!/usr/bin/env perl # Convert a fastq to a fasta/qual combo using BioPerl, with some Linux commands use Bio::Perl; use Data::Dumper; use strict; use warnings; use threads; use Thread::Queue; use Getopt::Long; my $settings={}; $|=1; my %numSequences; # static for a subroutine ex[......]

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使用CPAN模块自动安装perl模块

命令： perl　-MCPAN　-e　shell　初次运行CPAN时需要做一些设置，一路回车在最后选一个最近的CPAN镜像站点。例如国内的中国自由软件库： ftp://freesoft.cgi.gov.cn/pub/languages/perl/CPAN 获得帮助 cpan>h 列出CPAN上所有模块的列表 cpan>m 安装模块 perl -MCPAN -e shell cpan> install IO::Wrap cpan> install Net::Server cpan> install MIME::Wo[……]

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小生这厢有礼了(BioFaceBook Personal Blog)

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Merging separate sequence and quality files to FASTQ

Converting FASTQ to FASTA QUAL files

使用CPAN模块自动安装perl模块

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小生这厢有礼了(BioFaceBook Personal Blog)

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Merging separate sequence and quality files to FASTQ

Converting FASTQ to FASTA QUAL files

使用CPAN模块自动安装perl模块

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