Circos for comparative genomes

Circos: nucmer –prefix=refBAV1_qryVScds Dehalococcoides_BAV1.fasta Dehalococcoides_VS.cds.fasta show-tiling -i 80 -c > refBAV1_qryVScds.tiling awk -F ” ” ‘{print “chr1″ “\t” $1 “\t” $2}’ refBAV1_qryVScds.tiling > Dehalococcoidessp.VScds.gene_tableBAV1.txt

shenzy@shenzy-ubuntu:/winxp_disk2/shenzy/circos/circos-tutorials-0.62/tutorials/8/1$ perl ../../../../circos-0.62-1/bin/circos -conf circos.conf

shenzy@shenzy-ubuntu:/winxp_disk2/shenzy/circos/circos-tutorials-0.62/tutorials/8/1$ ll total 16001 -rwxrwxrwx 1 root root 528519 2012-12-27 16:11 circos1.png -rwxrwxrwx 1 root root 1065925 2012-12-27 14:33 circos2.png -rwxrwxrwx 1 root root 1230394 […]

Circos 安装和学习 (一) Tutorials and Course

The tutorials serve as a walkthrough through Circos. The course is a more structured set of materials that takes you through creating an image from scratch.

The tutorials act as documentation — each lesson presents a specific feature of Circos.

Example Image

Once you download and install Circos,

# install circos […]