TORMES and gapFinisher

TORMES: an automated pipeline for whole bacterial genome analysis Narciso M Quijada, David Rodríguez-Lázaro, Jose María Eiros, Marta Hernández Bioinformatics, Volume 35, Issue 21, 1 November 2019, Pages 4207–4212, gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output Juhana I. Kammonen , Olli-Pekka Smolander, Lars Paulin, Pedro A. B. Pereira, Pia Laine, Patrik […]

ClinVAP: A reporting strategy from variants to therapeutic options


ClinVAP: A reporting strategy from variants to therapeutic options


Abstract Motivation

Next-generation sequencing (NGS) has become routine in oncology and opens up new avenues of therapies, particularly in personalized oncology setting. An increasing number of cases also implies a need for a more robust, automated, and reproducible processing of long lists of […]

Multivariate analyses in R (PERMANOVA )

Multivariate analyses in R

By C Nell

Types of questions

Do groups differ in composition? Does community structure vary among regions or over time? Do environmental variables explain community patterns? Which species are responsible for differences among groups?

Multivariate analysis of ecological communities with vegan

install.packages(‘vegan’) library(vegan) ##Community ecology: ordination, disversity & dissimilarities Dataset […]