TORMES: an automated pipeline for whole bacterial genome analysis Narciso M Quijada, David Rodríguez-Lázaro, Jose María Eiros, Marta Hernández Bioinformatics, Volume 35, Issue 21, 1 November 2019, Pages 4207–4212, https://doi.org/10.1093/bioinformatics/btz220 gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output Juhana I. Kammonen , Olli-Pekka Smolander, Lars Paulin, Pedro A. B. Pereira, Pia Laine, Patrik […]
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https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btz924/5674039
ClinVAP: A reporting strategy from variants to therapeutic options
Abstract Motivation Next-generation sequencing (NGS) has become routine in oncology and opens up new avenues of therapies, particularly in personalized oncology setting. An increasing number of cases also implies a need for a more robust, automated, and reproducible processing of long lists of […] https://rpubs.com/collnell/manova Multivariate analyses in R By C Nell Types of questions Do groups differ in composition? Does community structure vary among regions or over time? Do environmental variables explain community patterns? Which species are responsible for differences among groups? Multivariate analysis of ecological communities with vegan install.packages(‘vegan’) library(vegan) ##Community ecology: ordination, disversity & dissimilarities Dataset […] |
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