usually bioinformatics tools

http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/

This directory contains applications for stand-alone use, built specifically for a Linux 64-bit machine. For help on the bigBed and bigWig applications see: http://genome.ucsc.edu/goldenPath/help/bigBed.html http://genome.ucsc.edu/golden[......]

Read more

[…]

ubuntu 9.10 下安装glimmer3失败及其解决办法

(1)安装前,先修改src/Common下第26行#include <string> 为 #include <cstring>;再make,可是仍然会产生以下错误 * Make Target is  all #####    Making Directory  /usr/local/glimmer3.02/src/Common   all  ##### make[1]: 正在进入目录 `/usr/local/glimmer3.02/src/Common’ @@@@@@@@@@@@@@@@@@@  delcher.cc @@@@@@@@@@@@@@@@@@@@@[……]

Read more

[…]

Bpipe A tool for running and managing bioinformatics pipelines

Starting from a Shell Script

In this tutorial we will develop a Bpipe pipeline script for a realistic (but simplified) analysis pipeline used for variant calling on NGS data. In this pipeline the following stages are executed:

  • sequence alignment using bwa
  • sorting and indexing output files usi[……]

Read more

[…]