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BEReX is a new biomedical knowledge integration, search, and exploration tool. BEReX integrates eight popular databases (STRING, DrugBank, KEGG, PharmGKB, BioGRID, GO, HPRD, and MSigDB) and delineates an integrated network by combining the information available from these databases. Users search th[……] […] KEGG Pathway Pipeline: blastall -p blastp -d KEGG -i Haiyan.Pep.fasta -m 7 -a 10 -o Haiyan.Pep.fasta.blastp.m7 & ./tBLASTnParser.pl Haiyan.Pep.fasta.blastp.m7 Haiyan.Pep.fasta.blastp.m8 sed ‘1,1d’ Haiyan.Pep.fasta.blastp.m8 > Haiyan.Pep.fasta.blastp.m8.delhead /home/zhouzh/lib/454-2.5/bin/ru[……] […] When to use Mauve Contig Mover (MCM)The Mauve Contig Mover (MCM) can be used to order a draft genome relative to a related reference genome. The functionality of this software module has been described in Rissman et al. 2009 , a publication in Bioinformatics. The Mauve Contig Mover can ease a com[……] […]
[…] Ok, I’ll do mine in English:
[…] http://circos.ca/documentation/Tutorials and CourseThe tutorials serve as a walkthrough through Circos. The course is a more structured set of materials that takes you through creating an image from scratch. The tutorials act as documentation — each lesson presents a specific feature of Circo[……] […] Our project TaxCollector has been published in MPDI Diversity. Abstract The high level of conservation of 16S ribosomal RNA gene (16S rRNA) in all Prokaryotes makes this gene an ideal tool for the rapid identification and classification of these microorganisms. Databases such as the Ribosomal Da[……] […] http://www.bioconductor.org/packages/release/bioc/html/mcaGUI.html mcaGUIMicrobial Community Analysis GUIBioconductor version: Release (2.10) Microbial community analysis GUI for R using gWidgets. Author: Wade K. Copeland, Vandhana Krishnan, Daniel Beck, Matt Settles, James Foster, Kyu-Ch[……] […] http://bib.oxfordjournals.org/content/13/4/495.full Key Points
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