http://www.bioconductor.org/packages/release/bioc/html/mcaGUI.html
mcaGUI
Microbial Community Analysis GUI
Bioconductor version: Release (2.10)
Microbial community analysis GUI for R using gWidgets.
Author: Wade K. Copeland, Vandhana Krishnan, Daniel Beck, Matt Settles, James Foster, Kyu-Chul Cho, Mitch Day, Roxana Hickey, Ursel M.E. Schutte, Xia Zhou, Chris Williams, Larry J. Forney, Zaid Abdo, Poor Man’s GUI (PMG) base code by John Verzani with contributions by Yvonnick Noel
Maintainer: Wade K. Copeland <wade at kingcopeland.com>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("mcaGUI")
To cite this package in a publication, start R and enter:
citation("mcaGUI")
Documentation
| R Script | An_Introduction_and_User_Guide_for_mcaGUI.pdf | |
| Reference Manual | ||
| Text | README |
Details
| biocViews | Bioinformatics, Clustering, GUI, Sequencing, Software, Visualization |
| Depends | lattice, MASS, proto, foreign, gWidgets(>= 0.0-36), gWidgetsRGtk2(>= 0.0-53),OTUbase, vegan, bpca |
| Imports | |
| Suggests | |
| System Requirements | |
| License | GPL (>= 2) |
| URL | http://www.ibest.uidaho.edu/ibest/index.php |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.4.0 |
| Since | Bioconductor 2.8 (R-2.13) |
Package Downloads
| Package Source | mcaGUI_1.4.0.tar.gz |
| Windows Binary | mcaGUI_1.4.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | mcaGUI_1.4.0.tgz |
| Package Downloads Report | Download Stats |
There’s an implicit Venn diaargm of probes that appear (or not) in TopTables, and those that are mapped (or not) by IPA. We want to know about any topTable probes (particularly in the synergistic contrast) that remain unmapped by IPA how many are there, can we look them up in Ensembl or elsewhere and get a rough idea of their predicted function, domain content, etc.
I hope so