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Use the built-in “samtools sort” command rather than a generic sort. Samtools sort works on BAM files so you should convert your alignments to BAM format using samtools view -bS filename.sam > filename.bam samtools sort filename.bam sorted samtools index sorted.bam This ofcourse assumes you have generated the SAM file using method (1). The file “sorted.bam” […] General Info As well as posting new announcements on the front page of http://www.1000genomes.org, we have both rss http://www.1000genomes.org/announcements/rss.xml and twitter http://twitter.com/1000genomes twitter You can also subscribe to and announcements list we have setup. http://listserver.1000genomes.org/ma…o/1000announce 1000announce@1000genomes.org We have started an FAQ http://www.1000genomes.org/faq to provide help as to where to find certain data sets which surround […] |
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