phenotype gproNOG.annotations bitscores
This is the complete workflow used to generate a random forest model using output data from an hmmsearch of your protein coding genes against eggNOG gamma proteobacterial protein HMMs. Before running this notebook, run the parse_hmmsearch.pl script to get a tab-delimited file containing bitscores for all isolates.
“`{r, read in data} # […]
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