Linux System Administration

Linux System Administration Author: Roc Zhou Date: 21 Aug 2010 This project is goning to move to: New Project Site (http://saunit.sourceforge.net) New Project Blog (http://saunit.sourceforge.net/blog) 基本系统管理 Linux Software RAID 为何使用 Software RAID 安装方案、实现和测试 DNS/Bind9 配置新拿到的域名 为南北双线配置”变态” DNS 南北双线 squid 加速 MySQL Bind 体系结构 文件系统备份和镜像 AA Center, Kerberos AA 基本描述 基本配置和测试 pam_kerb5 login 和 accounts information […]

phrap_merge pipeline

sed ‘/NUCMER/’d Kall_usnused.delta > Kall_usnused.delta1 sed ‘/MD0\/work/’d Kall_usnused.delta1 > Kall_usnused.delta2

cat – all.delta.filter2 <<< “NUCMER” > all.delta.filter3

cat – all.delta.filter3 <<< “/MD0/work/aphis_phrap/aphisfinish_K31_up200.fna /MD0/work/aphis_phrap/20110718105830/t10.fna ” > all.delta.filter4

show-coords -clorH 454AllContigs_s_unal1_378.contigs.delta.filter > 454AllContigs_s_unal1_378.contigs.delta.filter.cootds3

./get_phrap_pair.py -i total.coords3 -j total.aphis.fna -o aphis.pair.info &

./singleLinkageClustering.pl aphis.pair.info aphis.pair.info.clus

./split_clus_file.pl <dir> <clus_file> <total_contigfile> <clus_splitsize>

My amoA work

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