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In this tutorial I hope to introduce some of the concepts for using unix piping. Piping is a very useful feature to avoid creation of intermediate use once files. Lets begin with a typical command to do paired end mapping with bwa: #-t 4 is for using 4 threads/cores bwa aln -t 4 ./hg19.fasta ./s1_1.fastq […] PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System have a set of Pathways. Not many prokaryotic genomes are available at PANTHER. List of species here Biocyc BioCyc is a collection of 1962 Pathway/Genome Databases (PGDBs). Each PGDB in the BioCyc collection describes the genome and metabolic pathways of a single organism. BioCyc is a […] |
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