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http://abacas.sourceforge.net/index.html ABACAS is intended to rapidly contiguate (align, order, orientate), visualize and design primers to close gaps on shotgun assembled contigs based on a reference sequence.
ABACAS uses MUMmer to find alignment positions and identify syntenies of assembled contigs against the reference. The output is then processed to generate a pseudomolecule taking overlapping […] ABBA From amos Jump to: navigation, search ABBA: Assembly Boosted By Amino acid sequences Contents [hide] 1 Overview 2 Download 3 References 4 Acknowledgements Overview Assembly Boosted By Amino acid sequence is a comparative gene assembler, which uses amino acid sequences from predicted proteins to help build a better assembly. see the journal paper. […] |
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