RDP Tutorials (16s Analysis)

Contents

 

Workflows:

Processing 16S rRNA data using a unsupervised method

Processing 16S rRNA data using a supervised method

Processing functional gene data using a supervised method

Individual tools:

Using the Pipeline Initial Process

Align 16S rRNA sequences using Infernal Aligner

Using the RDP Classifier

Using the RDP MultiClassifier

Performing Complete Linkage Clustering

–Using the .clust File Results (for abundance stats, diversity stats, OTU matrix or rarefaction)

Performing statistical analysis (coming soon)

Align protein using HMMER3 Aligner

Frameshift-correction and closest match assignment by RDP FrameBot

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